Thanks for the help Mr. Fishy!
I tried everything that I could think of and Magix would run for about a half hour or 45 minutes and then error out on me. So, I tried a product called Xilisoft HD converter. Instant success! I was very quickly able to convert the MOV to an MP4 and it was great quality. So I had that piece. Since I wanted to stream it, I fed the MP4 into the A-0ne converter to Flash and that too was a success. A few more steps, but less headaches and got me to where I needed to be.
Thanks again for the help sir!